exRNAdisease

Entry Detail

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General Information

Database ID: exR0373656 RNA Name: ADAT2 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 143422832 End Site(bp): 143450695 External Links: ENSG00000189007

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC011511.4 chr19 10315471 10320678 - AC118549.1 chr1 77562416 77683419 - AP002990.1 chr11 62559603 62591531 - ATP5F1B chr12 56638175 56645984 - B4GALT6 chr18 31622247 31685836 - DDI2 chr1 15617458 15669044 + DUSP1 chr5 172768096 172771195 - EEF1A1 chr6 73515750 73523797 - EEF1G chr11 62559596 62574086 - FBXO31 chr16 87326987 87392142 - FBXO41 chr2 73254682 73284431 - FNDC3B chr3 172039578 172401669 + GLO1 chr6 38675925 38703145 - KNTC1 chr12 122527246 122626396 + LEPROT chr1 65420587 65436007 + PSME1 chr14 24136163 24138967 + RAVER1 chr19 10316212 10333638 - RPS6KB2 chr11 67428460 67435401 + RSC1A1 chr1 15659869 15661722 + SRSF10 chr1 23964347 23980927 - YWHAQ chr2 9583967 9630997 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-18b-5p chrX 134170084 134170106 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA