exRNAdisease

Entry Detail

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General Information

Database ID: exR0373657 RNA Name: ADAT3 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 1905399 End Site(bp): 1913447 External Links: ENSG00000213638

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand STRN3 chr14 30893799 31026401 - DBN1 chr5 177456608 177474401 - NUDT19 chr19 32691961 32713796 + STARD9 chr15 42575606 42720998 + KRT18 chr12 52948871 52952906 + JUND chr19 18279694 18281622 - MLLT6 chr17 38705273 38729795 + TMEM256-PLSCR3 chr17 7389734 7404097 - LARP1 chr5 154712843 154817605 + SYMPK chr19 45815410 45863194 - SLC9A3R1 chr17 74748628 74769353 + EXOSC2 chr9 130693721 130704894 + TMEM132A chr11 60924463 60937159 + HNRNPAB chr5 178204533 178211163 + DHX38 chr16 72093613 72112912 + HNRNPK chr9 83968083 83980616 - PLSCR3 chr17 7389727 7394842 - RPS28 chr19 8321158 8323340 + C5AR1 chr19 47290023 47322066 + DZIP1 chr13 95578202 95644703 - CIC chr19 42268537 42295797 + ZNF721 chr4 425815 499156 - SRSF4 chr1 29147743 29181900 - SIRPA chr20 1894167 1940592 + SCAMP4 chr19 1905372 1926013 + ARAP1 chr11 72685069 72793599 - RAN chr12 130872037 130877678 + HTT chr4 3041422 3243960 + PKMYT1 chr16 2968024 2980479 - CYB5R3 chr22 42617840 42649392 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand MIRLET7BHG chr22 46053869 46113928 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA