exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373659 RNA Name: ADCK2 RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 140672945 End Site(bp): 140696261 External Links: ENSG00000133597

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand TXNIP chr1 145992435 145996579 - RPL13A chr19 49487554 49492308 + RPS25 chr11 119015712 119018691 - RBM47 chr4 40423267 40630875 - INPPL1 chr11 72223701 72239147 + CCAR2 chr8 22604632 22621514 + PLCXD1 chrX 276322 303356 + ITGB2 chr21 44885953 44931989 - NDUFV1 chr11 67605653 67612554 + POGK chr1 166839447 166856344 + MTRNR2L12 chr3 96617188 96618236 - POC1A chr3 52075226 52154690 - HBS1L chr6 134960378 135103056 - RPL27A chr11 8682788 8714759 + RPL35 chr9 124857880 124861981 - NYNRIN chr14 24399003 24419283 + PTMA chr2 231706895 231713541 + TUBA1C chr12 49188736 49274603 + SOX11 chr2 5692384 5701385 + LARP4B chr10 806914 931705 - NDUFB2 chr7 140690777 140722790 + HNRNPA2B1 chr7 26173057 26201529 - RBMX chrX 136848004 136880764 - RPS3 chr11 75399515 75422280 + SPEN chr1 15836095 15940456 + COX10 chr17 14069490 14231736 + ABCA2 chr9 137007234 137028922 - CSE1L chr20 49046246 49096960 + DDHD2 chr8 38225218 38275558 + LSM12 chr17 44034328 44067619 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA