exRNAdisease

Entry Detail

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General Information

Database ID: exR0373674 RNA Name: ADD2 RNA Type: mRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 70607618 End Site(bp): 70768225 External Links: ENSG00000075340

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand COL21A1 chr6 56056590 56394094 - PRKD3 chr2 37250502 37324808 - SMIM20 chr4 25861830 25929874 + CNN3 chr1 94896949 94927223 - SHISA5 chr3 48467798 48504826 - PRUNE1 chr1 151008420 151035713 + FUBP3 chr9 130578965 130638352 + YWHAB chr20 44885702 44908532 + USP40 chr2 233475520 233566782 - DYNC1H1 chr14 101964573 102056443 + YIPF4 chr2 32277904 32316594 + RPS6 chr9 19375715 19380236 - C12orf75 chr12 105235290 105396097 + AC138894.1 chr16 28456371 28492098 - PPID chr4 158709127 158723396 - P4HB chr17 81843161 81860624 - CMSS1 chr3 99817837 100181732 + HSP90AB1 chr6 44246166 44253888 + TREX2 chrX 153444720 153470587 - AAK1 chr2 69457997 69674349 - RPL11 chr1 23691742 23696835 + MAP3K3 chr17 63622415 63696303 + ANKRD13C chr1 70258999 70354734 - ATP5F1D chr19 1241746 1244825 + GDF11 chr12 55743122 55757264 + ZMIZ2 chr7 44748581 44769881 + SRSF9 chr12 120461672 120469748 - SHMT1 chr17 18327860 18363563 - RPL4 chr15 66498015 66524532 - GTPBP1 chr22 38705742 38738299 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC245014.3 chr1 145281116 145281462 + AL356489.2 chr9 33697459 33700986 + FOXD3-AS1 chr1 63320884 63324441 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA