exRNAdisease

Entry Detail

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General Information

Database ID: exR0373675 RNA Name: ADD3 RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 109996368 End Site(bp): 110135565 External Links: ENSG00000148700

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ZNF90 chr19 20077994 20127076 + SLC2A3 chr12 7919230 7936187 - C16orf72 chr16 9091644 9121635 + SMARCB1 chr22 23786931 23838008 + MAGI1 chr3 65353525 66038834 - STK26 chrX 132023302 132075943 + GGH chr8 63015079 63038806 - AASS chr7 122073549 122144255 - AC011462.1 chr19 41350853 41425001 + COPS3 chr17 17246616 17281273 - HDGF chr1 156742109 156766925 - ATP6V1G1 chr9 114587769 114598879 + TIMELESS chr12 56416363 56449426 - CNTNAP2 chr7 146116002 148420998 + CNTN2 chr1 205042937 205078289 + TBCD chr17 82752065 82945914 + TM9SF4 chr20 32109714 32167258 + EXOSC8 chr13 36998816 37009614 + KHNYN chr14 24429286 24441843 + CLTA chr9 36190856 36304781 + MEST chr7 130486171 130506465 + MT-CO1 chrMT 5904 7445 + SELENOF chr1 86862445 86914424 - TOX4 chr14 21476597 21499175 + TMED5 chr1 93149742 93180516 - HILPDA chr7 128455849 128458418 + BCAS3 chr17 60677453 61392838 + RBMX chrX 136848004 136880764 - MRPS23 chr17 57834781 57850056 - TPT1 chr13 45333471 45341370 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC020928.1 chr19 36773112 36777078 + MALAT1 chr11 65497688 65506516 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA