exRNAdisease

Entry Detail

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General Information

Database ID: exR0373688 RNA Name: ADIPOR1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 202940826 End Site(bp): 202958572 External Links: ENSG00000159346

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand HEATR6 chr17 60041008 60078922 - SLC25A3 chr12 98593591 98606379 + CHD8 chr14 21385194 21456126 - PMM2 chr16 8788823 8849325 + ATP6AP1 chrX 154428645 154436516 + MAP3K11 chr11 65597756 65615382 - PLSCR3 chr17 7389727 7394842 - TMED5 chr1 93149742 93180516 - HIVEP1 chr6 12008762 12164999 + HSCB chr22 28742039 28757515 + TMEM109 chr11 60914158 60923443 + PDIA4 chr7 149003062 149028662 - TUBA1B chr12 49127782 49131397 - PCNX3 chr11 65615773 65637439 + CELF1 chr11 47465933 47565569 - PLIN2 chr9 19108375 19149290 - COMMD4 chr15 75336020 75343224 + TMED3 chr15 79311112 79427432 + SC5D chr11 121292681 121313410 + TRAPPC10 chr21 44012309 44106552 + HNRNPH1 chr5 179614178 179634784 - MGAT1 chr5 180784782 180815652 - RBAK chr7 5045821 5069487 + ZC3H18 chr16 88570381 88631966 + AQR chr15 34851782 34969742 - PPIA chr7 44796680 44824564 + DOCK2 chr5 169637268 170083382 + COX7C chr5 86617928 86620962 + MARCKSL1 chr1 32333839 32336233 - NEK3 chr13 52132639 52159861 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.5 chr12 6510275 6510522 + AC010733.2 chr2 60925909 60931610 + AC022167.2 chr16 8848105 8860456 + AC020915.1 chr19 58278966 58315197 + MALAT1 chr11 65497688 65506516 + NORAD chr20 36045618 36051018 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA