exRNAdisease

Entry Detail

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General Information

Database ID: exR0373689 RNA Name: ADIPOR2 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 1688574 End Site(bp): 1788674 External Links: ENSG00000006831

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand DOCK2 chr5 169637268 170083382 + HP1BP3 chr1 20740266 20787323 - MMP15 chr16 58025754 58046901 + SKA3 chr13 21153595 21176552 - MYO5A chr15 52307283 52529050 - BRD4 chr19 15235519 15332545 - DAZAP1 chr19 1407569 1435687 + EMC6 chr17 3668812 3669668 + DBNL chr7 44044640 44069456 + CAPZA2 chr7 116811070 116922049 + VPS26C chr21 37223420 37267919 - TAGLN2 chr1 159918107 159925732 - LDHA chr11 18394560 18408425 + HADH chr4 107989714 108035175 + GALNT1 chr18 35581117 35711834 + KIF3A chr5 132692628 132737638 - HELLS chr10 94501434 94613905 + EMC10 chr19 50476400 50490870 + RPRD1A chr18 35984387 36067576 - ANKRD28 chr3 15667236 15859771 - CMTM4 chr16 66614750 66696707 - AXIN1 chr16 287440 352723 - C2orf42 chr2 70149880 70248615 - HAT1 chr2 171922448 171983686 + CDCA3 chr12 6844793 6852066 - BMP2K chr4 78776342 78916372 + ANKHD1-EIF4EBP3 chr5 140401908 140549569 + XRCC5 chr2 216107464 216206303 + SF3B1 chr2 197388515 197435091 - PUM2 chr2 20248691 20352234 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-150-5p chr19 49500832 49500853 - hsa-miR-483-3p chr11 2134142 2134162 - hsa-miR-1321 chrX 85835832 85835849 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005746.1 chr17 61382785 61384680 + AL031282.2 chr1 1702736 1737688 - AL139393.2 chr6 160926269 160943110 + AP001496.2 chr18 5232876 5238526 - MALAT1 chr11 65497688 65506516 + PTPRD-AS1 chr9 8858127 8864772 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA