exRNAdisease

Entry Detail

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General Information

Database ID: exR0373702 RNA Name: ADPGK RNA Type: mRNA Chromosome: chr15 Starnd: - Coordinate: Start Site(bp): 72751369 End Site(bp): 72785846 External Links: ENSG00000159322

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand EEF1A1 chr6 73515750 73523797 - B4GAT1 chr11 66345374 66347629 - MKNK2 chr19 2037465 2051244 - UBA2 chr19 34428352 34471251 + PGK1 chrX 77910739 78129295 + STAMBP chr2 73828916 73873659 + CCDC150 chr2 196639554 196763490 + SRSF1 chr17 58000919 58007346 - GTF3C2 chr2 27325849 27357034 - EIF3H chr8 116642130 116766925 - ACTB chr7 5527148 5563784 - GMCL1 chr2 69829660 69881384 + BCAR3 chr1 93561741 93847150 - UBE2V2 chr8 48008415 48064708 + MTHFD2 chr2 74198610 74217565 + MT-CO1 chrMT 5904 7445 + NOL8 chr9 92297358 92325636 - EFTUD2 chr17 44849948 44899445 - PPP1R14B chr11 64244479 64246943 - ZFP42 chr4 187995771 188005046 + ATG4B chr2 241637213 241673857 + NDUFB3 chr2 201071433 201085750 + BCKDK chr16 31106107 31112791 + PCBP2 chr12 53452102 53481162 + MORC4 chrX 106813871 107000212 - HMGB2 chr4 173331376 173334432 - SLC25A29 chr14 100291116 100306547 - TBCA chr5 77691166 77868780 - SACS chr13 23328826 23433740 - PASK chr2 241106099 241150264 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC023509.1 chr12 53441741 53467528 + AC135050.1 chr16 31056460 31062803 + AL355488.1 chr1 110370154 110373003 + PCBP2-OT1 chr12 53464468 53465057 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA