exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373724 RNA Name: AFAP1L2 RNA Type: mRNA Chromosome: chr10 Starnd: - Coordinate: Start Site(bp): 114294824 End Site(bp): 114404756 External Links: ENSG00000169129

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand EEF1A1 chr6 73515750 73523797 - EHMT1 chr9 137618992 137870016 + FDFT1 chr8 11795573 11839304 + FTL chr19 48965309 48966879 + KCNC4 chr1 110211343 110283100 + KHDRBS1 chr1 32013868 32060850 + NUP37 chr12 102073103 102120120 - RAB5B chr12 55973913 55996683 + RPLP1 chr15 69452814 69456205 + SLC2A3 chr12 7919230 7936187 - WTIP chr19 34481758 34512304 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand ERICH6-AS1 chr3 150703564 150723005 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA