exRNAdisease

Entry Detail

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General Information

Database ID: exR0373729 RNA Name: AFG3L2 RNA Type: mRNA Chromosome: chr18 Starnd: - Coordinate: Start Site(bp): 12328944 End Site(bp): 12377227 External Links: ENSG00000141385

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RPS18 chr6 33272075 33276511 + RPS23 chr5 82273320 82278396 - SOX11 chr2 5692384 5701385 + MT-CO2 chrMT 7586 8269 + RPL3 chr22 39312882 39320389 - N4BP2L2 chr13 32432417 32538885 - CHMP5 chr9 33264879 33282070 + PEAK1 chr15 77100656 77420144 - PPP1CB chr2 28751640 28802940 + GDI2 chr10 5765223 5842132 - PITX1 chr5 135027734 135034813 - NUP107 chr12 68686951 68745809 + DYNLL1 chr12 120469850 120498493 + CAPN2 chr1 223701593 223776018 + CSDE1 chr1 114716913 114758676 - ALDOA chr16 30064164 30070457 + SLC41A1 chr1 205789094 205813748 - TRAPPC1 chr17 7930345 7932123 - ADH5 chr4 99070978 99088801 - RPL35 chr9 124857880 124861981 - LCP1 chr13 46125920 46211871 - GAPDH chr12 6534512 6538374 + FLNA chrX 154348524 154374638 - BTG2 chr1 203305491 203309602 + FASN chr17 82078338 82098294 - C17orf49 chr17 7014495 7017525 + HK2 chr2 74834127 74893359 + YBX1 chr1 42682418 42703805 + THOC5 chr22 29505879 29555216 - PTTG1IP chr21 44849585 44873903 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC091564.7 chr11 6610883 6616594 - AP001496.2 chr18 5232876 5238526 - SNHG1 chr11 62851984 62855953 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA