exRNAdisease

Entry Detail

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General Information

Database ID: exR0373731 RNA Name: AFMID RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 78187317 End Site(bp): 78207701 External Links: ENSG00000183077

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ALDOA chr16 30064164 30070457 + C8orf88 chr8 90958471 90985238 - CCT7 chr2 73233420 73253021 + CFL1 chr11 65823022 65862026 - CNOT1 chr16 58519951 58629885 - CRYBG2 chr1 26321698 26360080 - CSRP2 chr12 76858709 76879023 - EEF1D chr8 143579697 143599541 - FLNA chrX 154348524 154374638 - GTPBP3 chr19 17334920 17342731 + HLA-DPB1 chr6 33075990 33089696 + HOXD9 chr2 176122719 176124937 + LMNB1 chr5 126776623 126837020 + LPCAT1 chr5 1456480 1523962 - MAP3K11 chr11 65597756 65615382 - MYO1C chr17 1464186 1492686 - NCBP3 chr17 3802158 3846246 - PCNP chr3 101574180 101594465 + PPIA chr7 44796680 44824564 + RANBP2 chr2 108719482 108785809 + RBM5 chr3 50088919 50119021 + SIPA1L1 chr14 71320449 71741229 + SRA1 chr5 140537340 140558252 - TLR7 chrX 12867072 12890361 + UHRF1BP1 chr6 34792015 34883138 + UQCRHL chr1 15807169 15809348 - USF2 chr19 35268962 35279821 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL021707.3 chr22 38734730 38738990 + RMRP chr9 35657751 35658018 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA