exRNAdisease

Entry Detail

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General Information

Database ID: exR0373733 RNA Name: AFTPH RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 64524305 End Site(bp): 64593005 External Links: ENSG00000119844

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand BID chr22 17734138 17774770 - YWHAQ chr2 9583967 9630997 - CLEC2D chr12 9664969 9699553 + NAP1L1 chr12 76036585 76084958 - DTYMK chr2 241675747 241686944 - TWSG1 chr18 9334767 9402420 + TUBA1B chr12 49127782 49131397 - LAMC1 chr1 183023420 183145592 + BIRC2 chr11 102347211 102378670 + CUL3 chr2 224470150 224585397 - PGK1 chrX 77910739 78129295 + HLA-A chr6 29941260 29945884 + HEXA chr15 72340919 72376476 - STRN4 chr19 46719511 46746994 - RPUSD4 chr11 126202096 126211692 - HLA-F chr6 29722775 29738528 + BRPF3 chr6 36196744 36232790 + CD48 chr1 160678746 160711831 - ATP5MG chr11 118401606 118431496 + LCP1 chr13 46125920 46211871 - ATP8B2 chr1 154325553 154351304 + NCL chr2 231453531 231483641 - AKIRIN2 chr6 87674860 87702233 - HNRNPU chr1 244840638 244864560 - HDAC2 chr6 113933028 114011308 - PHF20 chr20 35771974 35950370 + RPL32 chr3 12834485 12841582 - MRPL4 chr19 10251901 10260055 + RPL27 chr17 42998273 43002959 + YWHAH chr22 31944522 31957603 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand LINC01405 chr12 110934590 110959093 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA