exRNAdisease

Entry Detail

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General Information

Database ID: exR0373734 RNA Name: AGA RNA Type: mRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 177430774 End Site(bp): 177442437 External Links: ENSG00000038002

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ANAPC4 chr4 25377213 25418498 + ATP6V1H chr8 53715543 53843558 - BTF3 chr5 73498408 73505635 + CAPN1 chr11 65180566 65212006 + CAT chr11 34438934 34472060 + CCDC169 chr13 36222008 36297840 - CCDC169-SOHLH2 chr13 36168794 36297842 - CHD8 chr14 21385194 21456126 - FADS2 chr11 61792980 61867354 + FAM107B chr10 14518557 14774897 - MCM2 chr3 127598410 127622436 + MRPL3 chr3 131462212 131502983 - MTRNR2L12 chr3 96617188 96618236 - PFN1 chr17 4945652 4949061 - PPM1A chr14 60245752 60299087 + PTGES3 chr12 56663341 56688408 - PUM3 chr9 2720469 2844095 - RPL13A chr19 49487554 49492308 + RPL27A chr11 8682788 8714759 + RPL5 chr1 92832013 92841924 + RPL8 chr8 144789765 144792587 - RPS20 chr8 56067295 56074581 - SPNS1 chr16 28974221 28984548 + SRGN chr10 69088103 69104805 + TAF7 chr5 141260225 141320784 - TMBIM6 chr12 49707725 49764934 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC109460.3 chr16 28974804 28990775 + LOH12CR2 chr12 12355406 12357067 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA