exRNAdisease

Entry Detail

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General Information

Database ID: exR0373735 RNA Name: AGAP1 RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 235494043 End Site(bp): 236131800 External Links: ENSG00000157985

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand KAT2A chr17 42113111 42121367 - LIN54 chr4 82909973 83012926 - ENAH chr1 225486835 225653142 - OXSR1 chr3 38165089 38255484 + NCOR2 chr12 124324415 124567589 - LMAN2 chr5 177331567 177351668 - NFATC2IP chr16 28950807 28967097 + C14orf132 chr14 96039324 96093889 + HES6 chr2 238238267 238240662 - SELENOW chr19 47778585 47784686 + HDAC3 chr5 141620876 141636849 - CUL3 chr2 224470150 224585397 - RPUSD1 chr16 784974 788397 - SNX10 chr7 26291895 26374329 + CNOT1 chr16 58519951 58629885 - MEIS1 chr2 66433452 66573869 + GIGYF2 chr2 232697299 232860575 + TEX264 chr3 51662693 51704323 + KIF1A chr2 240713761 240821036 - RPS27A chr2 55231903 55235853 + GNAS chr20 58839718 58911192 + TRAIP chr3 49828601 49856574 - GDAP2 chr1 117863485 117929621 - DYNC1LI1 chr3 32525974 32570858 - SLX1A chr16 30193887 30197561 + LRBA chr4 150264435 151015727 - GAPDH chr12 6534512 6538374 + PSMD7 chr16 74296814 74306288 + SIPA1L2 chr1 232397965 232561558 - HMGA2 chr12 65824131 65966295 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC022400.3 chr10 73674295 73730466 - AGAP1-IT1 chr2 235505751 235507566 + AGAP11 chr10 86970741 87010126 + AL136982.1 chr10 86992406 87010203 + NOP14-AS1 chr4 2934882 2961738 + SLX1A-SULT1A3 chr16 30193892 30204310 + TMEM147-AS1 chr19 35540738 35546029 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA