exRNAdisease

Entry Detail

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General Information

Database ID: exR0373737 RNA Name: AGAP3 RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 151085831 End Site(bp): 151144436 External Links: ENSG00000133612

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ZNF703 chr8 37695782 37700019 + INTS1 chr7 1470277 1504389 - AC010646.1 chr19 17235940 17255448 - RNF11 chr1 51236273 51273447 + SLC31A1 chr9 113221544 113264492 + GFM1 chr3 158644278 158692575 + NR2F6 chr19 17231883 17245940 - DOCK1 chr10 126905409 127452517 + TMEM181 chr6 158536436 158635428 + TMEM241 chr18 23197144 23437961 - CDC25A chr3 48157146 48188417 - POU5F1B chr8 127322183 127420066 + LONP1 chr19 5691834 5720572 - KRT10 chr17 40818117 40822614 - XYLT2 chr17 50346126 50363138 + KDM4B chr19 4969113 5153598 + BSG chr19 571277 583493 + RPS6 chr9 19375715 19380236 - PDGFA chr7 497258 520296 - FAM219B chr15 74899992 74906883 - HOXD11 chr2 176104216 176109754 + ADA chr20 44619522 44652233 - HMGA1 chr6 34236873 34246231 + CDK18 chr1 205504595 205532793 + SLC25A39 chr17 44319625 44324870 - ADIPOR1 chr1 202940826 202958572 - MT-ND4L chrMT 10470 10766 + INA chr10 103277138 103290346 + WDR6 chr3 49007062 49015953 + BUB3 chr10 123154402 123170467 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-299-5p chr14 101023800 101023821 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC022400.3 chr10 73674295 73730466 - AC087741.1 chr17 80200673 80205949 - AC079949.1 chr12 127142029 127146532 - AL355472.2 chr1 234357006 234365828 + AL356488.2 chr1 109100193 109100619 + FGD5-AS1 chr3 14920347 14948424 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA