exRNAdisease

Entry Detail

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General Information

Database ID: exR0373750 RNA Name: AGGF1 RNA Type: mRNA Chromosome: chr5 Starnd: + Coordinate: Start Site(bp): 77029251 End Site(bp): 77065234 External Links: ENSG00000164252

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ASPM chr1 197084127 197146694 - RPL27A chr11 8682788 8714759 + PGK1 chrX 77910739 78129295 + TUBA1B chr12 49127782 49131397 - EIF5A chr17 7306999 7312463 + FP565260.6 chr21 5155499 5165472 - MYL6 chr12 56158161 56163496 + FP565260.2 chr21 5116343 5133805 - ESRP1 chr8 94641074 94707466 + SUB1 chr5 32531633 32604079 + BZW2 chr7 16646131 16706523 + ACTA1 chr1 229431245 229434098 - B2M chr15 44711487 44718877 + NEDD4L chr18 58044226 58401540 + HLA-A chr6 29941260 29945884 + MARCKSL1 chr1 32333839 32336233 - RPS9 chr19 54200809 54249003 + AC008581.2 chr5 77030902 77152155 + KIFC3 chr16 57758217 57863053 - SMC4 chr3 160399274 160434954 + PRRC1 chr5 127517609 127555089 + TCEAL4 chrX 103576231 103587736 + PPP2R5B chr11 64917553 64934475 + ERAL1 chr17 28855010 28861061 + PBX1 chr1 164555584 164899296 + ID1 chr20 31605283 31606515 + CCPG1 chr15 55340032 55408510 - RPL23A chr17 28719985 28724359 + ACTN1 chr14 68874143 68979440 - MIF chr22 23894383 23895227 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand FGD5-AS1 chr3 14920347 14948424 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA