exRNAdisease

Entry Detail

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General Information

Database ID: exR0373752 RNA Name: AGL RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 99850361 End Site(bp): 99924023 External Links: ENSG00000162688

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand FSD1 chr19 4304598 4323843 + ATP5F1B chr12 56638175 56645984 - MRPL16 chr11 59806140 59810778 - CTPS1 chr1 40979688 41012565 + MARCKSL1 chr1 32333839 32336233 - ERCC6 chr10 49454470 49539538 - APP chr21 25880550 26171128 - CRLS1 chr20 6006093 6040053 + NAT10 chr11 34105617 34147670 + EEF1A1 chr6 73515750 73523797 - PTOV1 chr19 49850735 49860744 + NUCKS1 chr1 205712822 205750182 - KLHL15 chrX 23983720 24027186 - PPIA chr7 44796680 44824564 + RPS8 chr1 44775251 44778779 + POLD3 chr11 74493851 74669117 + ANXA7 chr10 73375101 73414076 - TBKBP1 chr17 47694081 47712050 + CARD10 chr22 37490362 37519542 - IQSEC1 chr3 12897043 13283281 - BEX4 chrX 103215108 103217246 + MRPL13 chr8 120380761 120445402 - CIAPIN1 chr16 57428187 57447420 - MIGA2 chr9 129036621 129072082 + KIF3C chr2 25926598 25982749 - DTL chr1 212035553 212107400 + KHDRBS1 chr1 32013868 32060850 + UHMK1 chr1 162497251 162529631 + AURKAIP1 chr1 1373730 1375495 - PARP1 chr1 226360691 226408093 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-302b-3p chr4 112648489 112648511 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand LINC00910 chr17 43338741 43389199 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA