exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373755 RNA Name: AGO2 RNA Type: mRNA Chromosome: chr8 Starnd: - Coordinate: Start Site(bp): 140520156 End Site(bp): 140635633 External Links: ENSG00000123908

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RPL13 chr16 89560657 89566828 + SPECC1 chr17 20009344 20319026 + ENO1 chr1 8861000 8879190 - EIF2AK1 chr7 6022247 6059175 - RAB5B chr12 55973913 55996683 + PLXNB2 chr22 50274979 50307646 - LENG8 chr19 54448887 54462037 + HNRNPU chr1 244840638 244864560 - SMAD7 chr18 48919853 48952052 - BRIX1 chr5 34915677 34925996 + CD3EAP chr19 45406209 45410766 + PSMC3IP chr17 42572315 42577831 - CCDC137 chr17 81666737 81673904 + TSPYL1 chr6 116267760 116279903 - TIAL1 chr10 119571802 119597029 - AGO1 chr1 35869808 35930532 + GID8 chr20 62938147 62948475 + ERBB2 chr17 39687914 39730426 + TSPAN13 chr7 16753755 16784536 + RMDN3 chr15 40735884 40755851 - TFDP1 chr13 113584721 113641473 + PLXNA1 chr3 126988594 127037392 + PDLIM1 chr10 95237572 95291012 - MCC chr5 113022099 113488823 - RANBP9 chr6 13621498 13711835 - NPC1 chr18 23506184 23586506 - ILF3 chr19 10654261 10692417 + APRT chr16 88809339 88811937 - SMARCD2 chr17 63832081 63843065 - TCF4 chr18 55222185 55664787 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068831.7 chr15 91022766 91023200 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA