exRNAdisease

Entry Detail

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General Information

Database ID: exR0373756 RNA Name: AGO3 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 35930718 End Site(bp): 36072500 External Links: ENSG00000126070

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand DVL3 chr3 184155377 184173614 + FBXL19 chr16 30923055 30948783 + ATAD3B chr1 1471765 1497848 + PPP1R12C chr19 55090914 55117637 - TXNIP chr1 145992435 145996579 - WASF2 chr1 27404230 27490167 - ADORA2B chr17 15944917 15975746 + MGLL chr3 127689062 128052190 - PDIA5 chr3 123067025 123225227 + SSR3 chr3 156540140 156555184 - MYCBP2 chr13 77044657 77327094 - SNRPN chr15 24823637 24978723 + DVL1 chr1 1335276 1349418 - RPL13 chr16 89560657 89566828 + ZNF775 chr7 150368790 150398630 + SLC5A6 chr2 27199587 27212958 - CAPN15 chr16 527712 554636 + PAICS chr4 56435741 56464579 + ALKBH6 chr19 36009120 36014239 - CHD3 chr17 7884796 7912760 + FAM126B chr2 200973718 201071671 - RIMBP3B chr22 21383374 21389478 + AC073111.4 chr7 150400702 150412470 + SPAG5 chr17 28577565 28599025 - YBX1 chr1 42682418 42703805 + PPA2 chr4 105369077 105474067 - MT-ND4L chrMT 10470 10766 + VPS13B chr8 99013266 99877580 + RPS3 chr11 75399515 75422280 + DIP2A chr21 46458891 46570015 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002116.1 chr19 36008638 36014235 - AC007952.4 chr17 19112000 19112636 - AC108136.1 chr8 122485515 122489815 - AC079949.1 chr12 127142029 127146532 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA