exRNAdisease

Entry Detail

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General Information

Database ID: exR0373757 RNA Name: AGO4 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 35808016 End Site(bp): 35857890 External Links: ENSG00000134698

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADAM19 chr5 157395534 157575775 - MT1G chr16 56666731 56668065 - POLD2 chr7 44114681 44124358 - UBXN6 chr19 4444999 4457794 - RPLP2 chr11 809965 812880 + TATDN2 chr3 10248023 10281218 + PTGES2 chr9 128120693 128128462 - VAMP3 chr1 7771296 7781432 + CBFA2T2 chr20 33490075 33650036 + TMEM132A chr11 60924463 60937159 + MT-CO3 chrMT 9207 9990 + TRIM73 chr7 75395063 75410996 + SFPQ chr1 35176378 35193145 - PMEL chr12 55954105 55973317 - RPL37 chr5 40825262 40835222 - GATA2 chr3 128479427 128493201 - PTMA chr2 231706895 231713541 + SRGN chr10 69088103 69104805 + YBX1 chr1 42682418 42703805 + SLC38A2 chr12 46358188 46372773 - HNRNPF chr10 43385617 43409166 - ANKH chr5 14704800 14871778 - AGO3 chr1 35930718 36072500 + OSBPL8 chr12 76351797 76559809 - DDX5 chr17 64498254 64508199 - SDF4 chr1 1216908 1232067 - XPO1 chr2 61477849 61538626 - LGMN chr14 92703807 92748679 - ARL8B chr3 5122245 5180912 + GGCT chr7 30496621 30504841 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC124944.3 chr3 195900986 195903417 + NEAT1 chr11 65422774 65445540 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA