exRNAdisease

Entry Detail

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General Information

Database ID: exR0373759 RNA Name: AGPAT2 RNA Type: mRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 136673143 End Site(bp): 136687457 External Links: ENSG00000169692

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA7 chr19 1039997 1065572 + ARF1 chr1 228082660 228099212 + CSNK1E chr22 38290691 38318084 - DNAJB6 chr7 157335381 157417439 + ENO1 chr1 8861000 8879190 - EP300 chr22 41092592 41180077 + EZR chr6 158765741 158819368 - FTL chr19 48965309 48966879 + GEMIN5 chr5 154887411 154938211 - ILF3 chr19 10654261 10692417 + ITM2C chr2 230864639 230879248 + MTA1 chr14 105419820 105470729 + MYD88 chr3 38138478 38143022 + NELFE chr6 31952087 31959038 - NKX3-2 chr4 13540830 13544508 - PLXNA3 chrX 154458281 154477779 + POLD1 chr19 50384204 50418018 + QPRT chr16 29663279 29698699 + RPL13A chr19 49487554 49492308 + RPS15 chr19 1438358 1440494 + SRSF4 chr1 29147743 29181900 - TNK2 chr3 195863364 195911945 - TRAPPC12 chr2 3379675 3485094 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC019205.1 chr6 73263212 73301789 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA