exRNAdisease

Entry Detail

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General Information

Database ID: exR0373761 RNA Name: AGPAT4 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 161129967 End Site(bp): 161274061 External Links: ENSG00000026652

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CLIC1 chr6 31730581 31739763 - TMEM237 chr2 201620184 201643570 - EIF4G2 chr11 10797050 10808940 - METAP1 chr4 98995659 99062809 + TNFRSF13B chr17 16929816 16972118 - ILF2 chr1 153661788 153671028 - SPAG16 chr2 213284379 214410501 + FASN chr17 82078338 82098294 - DCK chr4 70992538 71030914 + RPL13 chr16 89560657 89566828 + HEXIM1 chr17 45148502 45152101 + DDB1 chr11 61299451 61342596 - PRR14 chr16 30650717 30656440 + RPS27A chr2 55231903 55235853 + SYMPK chr19 45815410 45863194 - SNRPD2 chr19 45687454 45692569 - RALY chr20 33993646 34108308 + BSG chr19 571277 583493 + RFT1 chr3 53088483 53130453 - LRRN1 chr3 3799431 3849834 + HP1BP3 chr1 20740266 20787323 - RTF1 chr15 41408408 41483563 + PHLDA1 chr12 76025447 76033932 - CLIP1 chr12 122271432 122422632 - GART chr21 33503931 33543491 - TOMM22 chr22 38681957 38685421 + CCDC102A chr16 57512181 57536571 - TXLNA chr1 32179675 32198285 + TMED9 chr5 177592203 177597242 + YIF1B chr19 38303558 38317273 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005394.2 chr19 28435388 28727680 - AL353719.1 chr10 99621055 99621918 + JAKMIP2-AS1 chr5 147559994 147662009 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA