exRNAdisease

Entry Detail

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General Information

Database ID: exR0373762 RNA Name: AGPAT5 RNA Type: mRNA Chromosome: chr8 Starnd: + Coordinate: Start Site(bp): 6708642 End Site(bp): 6761503 External Links: ENSG00000155189

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand MFSD14B chr9 94374569 94461042 + RPL18A chr19 17859910 17864153 + NCL chr2 231453531 231483641 - PFN1 chr17 4945652 4949061 - GNA12 chr7 2728105 2844308 - RPL14 chr3 40457292 40468587 + MMP24OS chr20 35201745 35278131 - Z82206.1 chr22 39960397 39964718 + PRKAB1 chr12 119667864 119681624 + TMEM129 chr4 1715952 1721358 - PIGL chr17 16217191 16351797 + ARAP1 chr11 72685069 72793599 - MRPL30 chr2 99181152 99199561 + ELP3 chr8 28089673 28191156 + AC010422.3 chr19 12643831 12648397 - EEF1G chr11 62559596 62574086 - SLC9A3 chr5 470456 524449 - EIF2A chr3 150546678 150586016 + ARL6IP1 chr16 18791669 18801572 - TMEM241 chr18 23197144 23437961 - PKIG chr20 44531785 44624247 + ATF2 chr2 175072250 175168382 - LENG8 chr19 54448887 54462037 + TMEM248 chr7 66921225 66958551 + FKBP4 chr12 2794970 2805423 + TPT1 chr13 45333471 45341370 - ELL chr19 18442663 18522116 - DPY19L1 chr7 34928876 35038271 - CRYL1 chr13 20403666 20525873 - RACK1 chr5 181236897 181248096 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010442.1 chr5 466124 473098 - AC104461.1 chr1 200333193 200478669 + AL022311.1 chr22 37876148 37895563 + AC116565.1 chr4 577168 618076 + ESRG chr3 54632122 54639857 - MALAT1 chr11 65497688 65506516 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA