exRNAdisease

Entry Detail

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General Information

Database ID: exR0373763 RNA Name: AGPS RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 177392757 End Site(bp): 177559299 External Links: ENSG00000018510

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand C2orf81 chr2 74414176 74421591 - ZDHHC8 chr22 20129456 20148007 + HES1 chr3 194136148 194138732 + AP2M1 chr3 184174689 184184091 + NDUFB11 chrX 47142216 47145504 - RPS3A chr4 151099624 151104642 + NUDT15 chr13 48037726 48047221 + HMGCR chr5 75336329 75362101 + OXA1L chr14 22766522 22773042 + RPL27A chr11 8682788 8714759 + RAB7A chr3 128726183 128814798 + RSRC2 chr12 122503454 122527000 - CDCA7 chr2 173354820 173368997 + DMWD chr19 45782947 45792845 - NCOR2 chr12 124324415 124567589 - PSMC6 chr14 52707178 52728590 + ATF4 chr22 39519695 39522685 + EIF4G3 chr1 20806292 21176888 - RPS24 chr10 78033760 78056813 + ANAPC4 chr4 25377213 25418498 + KHSRP chr19 6413348 6424794 - PSMB7 chr9 124353465 124415444 - TRAP1 chr16 3651639 3717553 - NCAPD2 chr12 6493356 6531955 + FEZF2 chr3 62369681 62374324 - ENO1 chr1 8861000 8879190 - GPR176 chr15 39799008 39920266 - HSPA4 chr5 133052013 133106449 + RPL12 chr9 127447674 127451406 - PARP2 chr14 20343582 20357905 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL022311.1 chr22 37876148 37895563 + AC138932.3 chr16 14909887 14911345 - AP005263.1 chr18 9102736 9254346 + LINC00910 chr17 43338741 43389199 - LINC01641 chr1 227393554 227431035 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA