exRNAdisease

Entry Detail

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General Information

Database ID: exR0373766 RNA Name: AGRN RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 1020120 End Site(bp): 1056118 External Links: ENSG00000188157

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA2 chr9 137007234 137028922 - LDB1 chr10 102106489 102120368 - PPP1R14B chr11 64244479 64246943 - SAE1 chr19 47113274 47210636 + BTBD2 chr19 1985438 2034881 - ARFGAP2 chr11 47164299 47177125 - HAX1 chr1 154272589 154275875 + GPR153 chr1 6247353 6261098 - SHMT2 chr12 57229573 57234935 + INPPL1 chr11 72223701 72239147 + TSPAN4 chr11 842812 867116 + ZCCHC14 chr16 87406246 87493024 - CKAP5 chr11 46743048 46846308 - POP7 chr7 100706121 100707486 + PSMC5 chr17 63827152 63832026 + VPS26A chr10 69123512 69174412 + AP002990.1 chr11 62559603 62591531 - PAK6 chr15 40217428 40277487 + ARFGEF1 chr8 67173511 67343781 - TECR chr19 14517085 14565980 + TLN1 chr9 35696948 35732195 - CHD2 chr15 92900189 93027996 + TOE1 chr1 45340052 45343973 + STK11 chr19 1177558 1228431 + FGFRL1 chr4 1009936 1026898 + CYB5R3 chr22 42617840 42649392 - OTUD5 chrX 48922028 48958386 - EAF1 chr3 15427598 15450635 + EFTUD2 chr17 44849948 44899445 - DERA chr12 15911302 16037381 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-let-7a-5p chr9 94175962 94175983 + hsa-miR-184 chr15 79209840 79209861 + hsa-miR-654-5p chr14 101040234 101040255 + hsa-miR-541-3p chr14 101064548 101064569 + hsa-miR-5100 chr10 42997630 42997651 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC005332.6 chr17 68126666 68129586 + AC079922.2 chr2 112641832 112645720 - AC114271.1 chr19 10333436 10336248 + AD000090.1 chr19 35557956 35581954 + AL031963.3 chr6 3068045 3068894 - AC079949.1 chr12 127142029 127146532 - AL645608.6 chr1 904834 915976 + AL662884.1 chr6 32184733 32185882 - AP001107.5 chr11 66409158 66417137 + BACH1-IT2 chr21 29370497 29373709 + EPB41L4A-AS1 chr5 112160526 112164818 + MIRLET7BHG chr22 46053869 46113928 + NOP14-AS1 chr4 2934882 2961738 + NORAD chr20 36045618 36051018 - SNHG3 chr1 28505980 28510892 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA