exRNAdisease

Entry Detail

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General Information

Database ID: exR0373772 RNA Name: AGTRAP RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 11736084 End Site(bp): 11754802 External Links: ENSG00000177674

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand LDHA chr11 18394560 18408425 + STK4 chr20 44966479 45080021 + ACPP chr3 132317369 132368298 + HOXB1 chr17 48528526 48531011 - TMSB4X chrX 12975110 12977227 + PAFAH1B3 chr19 42297033 42303546 - KDM3A chr2 86440647 86492716 + ICE1 chr5 5420664 5490220 + CCDC88C chr14 91271323 91417844 - TUBA1C chr12 49188736 49274603 + POGK chr1 166839447 166856344 + NUCB1 chr19 48900312 48923372 + RPL30 chr8 98024851 98046469 - HSF1 chr8 144291591 144314720 + PABPC3 chr13 25095868 25099254 + PABPN1 chr14 23321289 23326185 + KRT19 chr17 41523617 41528308 - SLC2A13 chr12 39755025 40106089 - UBE2T chr1 202331657 202341980 - XPC chr3 14145147 14178783 - FUS chr16 31180110 31194871 + TJAP1 chr6 43477523 43506556 + MAD2L2 chr1 11674480 11691650 - CNPY3 chr6 42929192 42939294 + STAT5B chr17 42199177 42276707 - SCARB1 chr12 124776856 124882668 - IQGAP1 chr15 90388242 90502239 + SND1 chr7 127652194 128092609 + HLA-B chr6 31269491 31357188 - APEH chr3 49674014 49683971 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-34a-5p chr1 9151735 9151756 - hsa-miR-188-5p chrX 50003517 50003537 + hsa-miR-34c-5p chr11 111513451 111513473 + hsa-miR-324-5p chr17 7223343 7223364 - hsa-miR-654-5p chr14 101040234 101040255 + hsa-miR-129-2-3p chr11 43581450 43581471 + hsa-miR-330-5p chr19 45639049 45639070 - hsa-miR-628-5p chr15 55372991 55373012 - hsa-miR-541-3p chr14 101064548 101064569 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + MIR663AHG chr20 26167817 26251546 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA