exRNAdisease

Entry Detail

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General Information

Database ID: exR0373775 RNA Name: AHCTF1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 246839098 End Site(bp): 246931967 External Links: ENSG00000153207

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADGRL2 chr1 81306160 81992436 + BBX chr3 107522936 107811339 + CTNND1 chr11 57753243 57819546 + DESI2 chr1 244653103 244709033 + DIP2A chr21 46458891 46570015 + DYM chr18 49041474 49461347 - FAF1 chr1 50437028 50960267 - FAM72D chr1 145095974 145112696 + FKBP8 chr19 18531751 18544077 - GANAB chr11 62624826 62646726 - GATA4 chr8 11676959 11760002 + KLHL42 chr12 27780048 27803040 + OAZ1 chr19 2269509 2273490 + OS9 chr12 57693955 57721557 + PML chr15 73994673 74047827 + PPP2R2A chr8 26291508 26372680 + PTMA chr2 231706895 231713541 + RPL18 chr19 48615328 48619184 - RPS8 chr1 44775251 44778779 + RRM2B chr8 102204502 102238961 - RTN3 chr11 63681446 63759891 + SDHC chr1 161314257 161375340 + SRSF9 chr12 120461672 120469748 - STK35 chr20 2101827 2177038 + UBE4B chr1 10032832 10181239 + ZSWIM8 chr10 73785582 73801797 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand FTX chrX 73940435 74293574 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA