exRNAdisease

Entry Detail

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General Information

Database ID: exR0373778 RNA Name: AHCYL2 RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 129225023 End Site(bp): 129430211 External Links: ENSG00000158467

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AHCYL1 chr1 109984765 110023742 + IQCC chr1 32205661 32208687 + HSP90AB1 chr6 44246166 44253888 + HMGCS1 chr5 43287470 43313512 - MFAP3L chr4 169986597 170033031 - RPL22L1 chr3 170864875 170870208 - LIN28A chr1 26410817 26429728 + CD9 chr12 6199715 6238271 + TPT1 chr13 45333471 45341370 - NFYB chr12 104117086 104138241 - LMNB2 chr19 2427638 2456959 - ARPP19 chr15 52547045 52569883 - CFL1 chr11 65823022 65862026 - RNPS1 chr16 2253116 2268397 - RCAN1 chr21 34513142 34615113 - DNAAF5 chr7 726699 786475 + PGK1 chrX 77910739 78129295 + GGA2 chr16 23463542 23521995 - HERC2 chr15 28111040 28322172 - SYT11 chr1 155859567 155885199 + KMT5B chr11 68154863 68213828 - CSTF2 chrX 100820359 100840932 + MRPL15 chr8 54135241 54148514 + EEF1D chr8 143579697 143599541 - AKIRIN1 chr1 38991276 39006059 + RPS14 chr5 150442635 150449739 - CDK2AP1 chr12 123250112 123272334 - TMUB1 chr7 151081085 151083493 - TUBA1B chr12 49127782 49131397 - UTP3 chr4 70688532 70690551 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009022.1 chr16 69976297 70065948 - AL049796.1 chr1 93847174 93848939 + LINC01535 chr19 37251885 37265535 + U91319.1 chr16 13246232 13563388 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA