exRNAdisease

Entry Detail

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General Information

Database ID: exR0373781 RNA Name: AHNAK RNA Type: mRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 62433542 End Site(bp): 62556235 External Links: ENSG00000124942

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand SRRM2 chr16 2752626 2772538 + C15orf39 chr15 75195643 75212169 + DGKI chr7 137381037 137847092 - LRRC8A chr9 128882112 128918039 + PPP1R8 chr1 27830782 27851676 + COMT chr22 19941733 19969975 + SLC16A1 chr1 112911847 112957013 - RBM33 chr7 155644451 155781485 + PSMD8 chr19 38374536 38383824 + PSMB1 chr6 170535120 170553307 - DNMT3A chr2 25227855 25342590 - PABPC3 chr13 25095868 25099254 + TOR1AIP2 chr1 179839967 179877803 - APP chr21 25880550 26171128 - MPZL1 chr1 167721192 167791919 + DCAF8 chr1 160215715 160262549 - FBXO31 chr16 87326987 87392142 - SORL1 chr11 121452314 121633763 + RABEP1 chr17 5282265 5386340 + ARL2BP chr16 57245259 57253635 + HUWE1 chrX 53532096 53686728 - RACK1 chr5 181236897 181248096 - KDM6A chrX 44873177 45112602 + CCNG2 chr4 77157207 77433388 + TMEM132A chr11 60924463 60937159 + PPP6R1 chr19 55229779 55259017 - R3HCC1 chr8 23270120 23296279 + TTC38 chr22 46267961 46294008 + MFN2 chr1 11980181 12013514 + MORF4L2 chrX 103675496 103688158 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC010327.5 chr19 55216660 55221616 + AD000090.1 chr19 35557956 35581954 + AL139385.1 chr13 110613082 110616353 - LINC00174 chr7 66376044 66493566 - RMRP chr9 35657751 35658018 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA