exRNAdisease

Entry Detail

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General Information

Database ID: exR0373783 RNA Name: AHR RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 16916359 End Site(bp): 17346152 External Links: ENSG00000106546

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AKR1A1 chr1 45550543 45570049 + AP3B1 chr5 78000525 78294755 - CAPRIN1 chr11 34051731 34102610 + CCDC91 chr12 28133249 28581511 + CNN3 chr1 94896949 94927223 - COMMD1 chr2 61888724 62147247 + DCAF6 chr1 167935783 168075843 + FLT4 chr5 180601506 180649624 - GAPDH chr12 6534512 6538374 + HMGB2 chr4 173331376 173334432 - LGALS9 chr17 27629798 27649560 + MED28 chr4 17614641 17634105 + NAGK chr2 71064344 71079808 + NOP53 chr19 47745546 47757058 + PTBP1 chr19 797075 812327 + RFTN1 chr3 16313574 16514026 - RPS23 chr5 82273320 82278396 - RPS5 chr19 58386400 58394806 + SLC2A3 chr12 7919230 7936187 - SRF chr6 43171269 43181506 + SRP9 chr1 225777813 225790468 + USP53 chr4 119212587 119295517 + YIPF6 chrX 68498562 68537282 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC019117.3 chr7 17374867 17467256 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA