exRNAdisease

Entry Detail

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General Information

Database ID: exR0373784 RNA Name: AHRR RNA Type: mRNA Chromosome: chr5 Starnd: + Coordinate: Start Site(bp): 271670 End Site(bp): 438291 External Links: ENSG00000286169

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ALDOA chr16 30064164 30070457 + CARM1 chr19 10871513 10923070 + COQ2 chr4 83261536 83284914 - DDA1 chr19 17309518 17323298 + GATAD1 chr7 92447482 92460075 + GATM chr15 45361124 45402327 - HLA-C chr6 31268749 31272130 - HLA-DQA1 chr6 32628179 32647062 + KIF2C chr1 44739818 44767767 + LPGAT1 chr1 211743457 211830763 - MTMR3 chr22 29883155 30030866 + NAMPT chr7 106248298 106286326 - NDUFS7 chr19 1383527 1395589 + PDCD6 chr5 271621 314974 + PHB2 chr12 6965327 6970753 - PRKRIP1 chr7 102363872 102426676 + PUS7 chr7 105439661 105522271 - RPL11 chr1 23691742 23696835 + RPL13 chr16 89560657 89566828 + RPS19 chr19 41860255 41872925 + RPS8 chr1 44775251 44778779 + SDHA chr5 218241 257082 + STRAP chr12 15882387 15903478 + TAF1C chr16 84177847 84187070 - THAP7 chr22 20999104 21002196 - TRAPPC6A chr19 45162928 45178237 - TRIM65 chr17 75880335 75896951 - YIF1A chr11 66284580 66289145 - ZNF764 chr16 30553764 30558498 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand MIR155HG chr21 25561909 25575168 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA