exRNAdisease

Entry Detail

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General Information

Database ID: exR0373785 RNA Name: AHSA1 RNA Type: mRNA Chromosome: chr14 Starnd: + Coordinate: Start Site(bp): 77457870 End Site(bp): 77469472 External Links: ENSG00000100591

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ENO1 chr1 8861000 8879190 - RPS9 chr19 54200809 54249003 + OAZ1 chr19 2269509 2273490 + SDHC chr1 161314257 161375340 + RPLP0 chr12 120196699 120201235 - PIMREG chr17 6444441 6451469 + ST3GAL6 chr3 98732236 98821201 + MDK chr11 46380756 46383837 + ZNF608 chr5 124636913 124748807 - MT-ATP6 chrMT 8527 9207 + ALDOA chr16 30064164 30070457 + SIRPA chr20 1894167 1940592 + KRT19 chr17 41523617 41528308 - TTC7B chr14 90524564 90816479 - PCED1A chr20 2835314 2841190 - RPL27A chr11 8682788 8714759 + B2M chr15 44711487 44718877 + CCT4 chr2 61868085 61888671 - C9orf78 chr9 129827290 129835863 - IVNS1ABP chr1 185296388 185317273 - ZDHHC22 chr14 77131270 77142734 - CDCA7 chr2 173354820 173368997 + LCP1 chr13 46125920 46211871 - RPS26 chr12 56041351 56044697 + APH1A chr1 150265399 150269580 - LMNB2 chr19 2427638 2456959 - ATP5F1D chr19 1241746 1244825 + FTSJ3 chr17 63819433 63830012 - PTPRF chr1 43525187 43623666 + NOP10 chr15 34341713 34343177 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC239799.1 chr1 146235806 146237807 + AP001496.2 chr18 5232876 5238526 - MIR663AHG chr20 26167817 26251546 - RAB11B-AS1 chr19 8374373 8390685 - RMRP chr9 35657751 35658018 - SNHG5 chr6 85650491 85678932 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA