exRNAdisease

Entry Detail

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General Information

Database ID: exR0373788 RNA Name: AICDA RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 8602170 End Site(bp): 8612867 External Links: ENSG00000111732

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ERCC5 chr13 102807146 102876001 + UBE2Z chr17 48908407 48929056 + TAPBP chr6 33299694 33314387 - ALDH9A1 chr1 165662216 165698863 - ITM2C chr2 230864639 230879248 + ACTR1B chr2 97655939 97664044 - LGMN chr14 92703807 92748679 - ABL1 chr9 130713016 130887675 + AC027644.4 chr7 66628958 66811189 + RPL30 chr8 98024851 98046469 - ATP5MG chr11 118401606 118431496 + POMT2 chr14 77274956 77320884 - RPS16 chr19 39433137 39435949 - SMUG1 chr12 54121277 54189008 - UBA2 chr19 34428352 34471251 + DCAF1 chr3 51395867 51500002 - MT-ND4 chrMT 10760 12137 + NADSYN1 chr11 71453109 71524107 + AP001781.2 chr11 111786286 111879425 - GAPDH chr12 6534512 6538374 + NACA2 chr17 61590421 61591219 - TOP2A chr17 40388525 40417896 - GAS2L3 chr12 100573683 100628288 + POLG2 chr17 64477785 64497054 - ATP5F1C chr10 7788147 7807815 + RPL8 chr8 144789765 144792587 - MTRNR2L8 chr11 10507894 10509186 - OVOL1 chr11 65787063 65797214 + RABGEF1 chr7 66682164 66811464 + SLC25A3 chr12 98593591 98606379 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand LINC02154 chrX 13266048 13303452 - MIR155HG chr21 25561909 25575168 + TSPOAP1-AS1 chr17 58324472 58415766 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA