exRNAdisease

Entry Detail

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General Information

Database ID: exR0373789 RNA Name: AIDA RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 222668013 End Site(bp): 222713210 External Links: ENSG00000186063

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand EEF1A1 chr6 73515750 73523797 - RPS6 chr9 19375715 19380236 - SALL1 chr16 51135975 51151367 - PDIA6 chr2 10783391 10837977 - STRN4 chr19 46719511 46746994 - RARRES2 chr7 150338317 150341662 - SH2B2 chr7 102285091 102321711 + TMEM106C chr12 47963569 47968878 + HLA-B chr6 31269491 31357188 - URI1 chr19 29923644 30016612 + PHGDH chr1 119648411 119744226 + UBXN1 chr11 62676498 62679117 - EMD chrX 154379273 154381523 + MRPL13 chr8 120380761 120445402 - SMAD4 chr18 51028394 51085045 + EIF4G1 chr3 184314495 184335358 + FEM1B chr15 68277745 68295862 + RPL4 chr15 66498015 66524532 - RAB8B chr15 63189560 63267776 + RPL11 chr1 23691742 23696835 + PAK1IP1 chr6 10694972 10709782 + MIF chr22 23894383 23895227 + EPB41L5 chr2 120013077 120179119 + ATP2B1 chr12 89588049 89709300 - ZFP36L2 chr2 43222402 43226606 - ADAR chr1 154582057 154628013 - NSMCE1 chr16 27224994 27268772 - GPSM1 chr9 136327476 136359605 + CPNE3 chr8 86514435 86561498 + AHNAK chr11 62433542 62556235 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA