exRNAdisease

Entry Detail

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General Information

Database ID: exR0373791 RNA Name: AIF1L RNA Type: mRNA Chromosome: chr9 Starnd: + Coordinate: Start Site(bp): 131096476 End Site(bp): 131123152 External Links: ENSG00000126878

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand APEX1 chr14 20455191 20457772 + HSPD1 chr2 197486584 197516737 - SNRPG chr2 70281362 70293740 - SHC1 chr1 154962298 154974395 - AC008763.2 chr19 7629796 7643048 + PIM2 chrX 48913182 48919024 - HSP90AB1 chr6 44246166 44253888 + MT-ND2 chrMT 4470 5511 + ALDH16A1 chr19 49453225 49471050 + HK1 chr10 69269984 69401884 + RPL11 chr1 23691742 23696835 + PDS5B chr13 32586452 32778019 + MIF chr22 23894383 23895227 + XRCC5 chr2 216107464 216206303 + C17orf113 chr17 42038232 42050601 - TUBA1C chr12 49188736 49274603 + LRRC75A chr17 16441577 16492193 - OTUD1 chr10 23439458 23442390 + INTS3 chr1 153728050 153774808 + ZNF449 chrX 135344796 135363413 + FTH1 chr11 61959718 61967634 - SRPRB chr3 133784023 133825772 + MARCKSL1 chr1 32333839 32336233 - MCM3AP chr21 46235133 46286297 - PCDHGB5 chr5 141397987 141512979 + ERH chr14 69380128 69398299 - PPCDC chr15 75023586 75117462 + SMARCD1 chr12 50085200 50100707 + RPL18 chr19 48615328 48619184 - RBM14 chr11 66616582 66627347 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-641 chr19 40282603 40282626 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008267.5 chr7 66493607 66495758 + AC069503.1 chr12 122007434 122020063 - AL021707.3 chr22 38734730 38738990 + MIR663AHG chr20 26167817 26251546 - NEAT1 chr11 65422774 65445540 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA