exRNAdisease

Entry Detail

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General Information

Database ID: exR0373792 RNA Name: AIFM1 RNA Type: mRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 130129362 End Site(bp): 130165887 External Links: ENSG00000156709

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand FKBP8 chr19 18531751 18544077 - RPL13A chr19 49487554 49492308 + DAPK3 chr19 3958453 3971123 - RPS19 chr19 41860255 41872925 + RPS21 chr20 62387103 62388520 + TARS2 chr1 150487364 150507609 + CHKA chr11 68052859 68121444 - NUP50 chr22 45163925 45188017 + FADS2 chr11 61792980 61867354 + RPS28 chr19 8321158 8323340 + RPLP1 chr15 69452814 69456205 + MXI1 chr10 110207605 110287365 + RPL36 chr19 5674947 5691875 + BCAP31 chrX 153700492 153724565 - AKAP11 chr13 42272152 42323261 + EPS8L2 chr11 694438 727727 + ACTR3 chr2 113890063 113962596 + WDCP chr2 24029347 24049575 - HEATR1 chr1 236549005 236604516 - DEGS1 chr1 224175756 224193441 + CCNG1 chr5 163437569 163446151 + RBM14 chr11 66616582 66627347 + GPBP1 chr5 57173948 57264679 + PTPN7 chr1 202147013 202161588 - AC058822.1 chr4 53377839 54295272 + EVL chr14 99971449 100144236 + ZNF451 chr6 57086844 57170305 + HCLS1 chr3 121631399 121660927 - EGLN3 chr14 33924227 34462774 - OAZ1 chr19 2269509 2273490 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC064802.1 chr8 114282067 114295839 + AC013269.1 chr2 130530275 130537182 + ITGB2-AS1 chr21 44921051 44929678 + JPX chrX 73944182 74070408 + SNHG14 chr15 24978583 25420336 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA