exRNAdisease

Entry Detail

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General Information

Database ID: exR0373795 RNA Name: AIG1 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 143060496 End Site(bp): 143341058 External Links: ENSG00000146416

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand NARS2 chr11 78435968 78574874 - MYO1G chr7 44962662 44979088 - ARHGAP30 chr1 161046946 161069970 - AREL1 chr14 74653437 74713108 - UBE3A chr15 25333728 25439051 - ATP2B4 chr1 203626561 203744081 + DTWD1 chr15 49621037 49656232 + RND2 chr17 43025231 43032041 + CYP26A1 chr10 93073475 93077885 + RGS12 chr4 3293028 3439913 + MT-CO2 chrMT 7586 8269 + ATRX chrX 77504878 77786233 - AC131160.1 chr3 183815568 183884889 - HSP90AB1 chr6 44246166 44253888 + DPP8 chr15 65442463 65517704 - PPP1R8 chr1 27830782 27851676 + EIF4B chr12 53006158 53042209 + FKBP1A chr20 1368978 1393172 - TUBB chr6 30720352 30725426 + HS1BP3 chr2 20560448 20651130 - ARRB2 chr17 4710596 4721499 + RNH1 chr11 494512 507300 - BOD1 chr5 173607145 173616659 - RPLP1 chr15 69452814 69456205 + GNAS chr20 58839718 58911192 + WDR12 chr2 202874782 203014798 - SLC43A3 chr11 57406954 57427580 - ST3GAL2 chr16 70375977 70439237 - TEX10 chr9 100302077 100352942 - IGFBP4 chr17 40443450 40457725 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC137630.2 chr3 48979918 48983985 - HOTAIRM1 chr7 27095647 27100265 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA