exRNAdisease

Entry Detail

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General Information

Database ID: exR0373803 RNA Name: AJUBA RNA Type: mRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 22971177 End Site(bp): 22982551 External Links: ENSG00000129474

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RXRA chr9 134317098 134440585 + RACK1 chr5 181236897 181248096 - ARL6IP4 chr12 122980060 122982913 + SORL1 chr11 121452314 121633763 + PISD chr22 31618491 31662432 - LDHA chr11 18394560 18408425 + TUBA1A chr12 49184795 49189080 - B2M chr15 44711487 44718877 + SUGP2 chr19 18990888 19034023 - HNRNPC chr14 21209136 21269494 - AC003006.1 chr19 57682045 57753575 + IFITM3 chr11 319676 327537 - VDAC1 chr5 133971871 134004975 - TPT1 chr13 45333471 45341370 - CACNG8 chr19 53963040 53990215 + HMGA1 chr6 34236873 34246231 + RAVER1 chr19 10316212 10333638 - PSMD10 chrX 108084207 108091549 - CNBP chr3 129169484 129183922 - CAPZA2 chr7 116811070 116922049 + SHMT1 chr17 18327860 18363563 - VPS4A chr16 69311350 69326939 + CMTM6 chr3 32481312 32502852 - GAPDH chr12 6534512 6538374 + ZNF551 chr19 57681969 57717301 + TRNP1 chr1 26993692 27000886 + CPNE1 chr20 35626031 35664956 - RPL13A chr19 49487554 49492308 + HIGD2A chr5 176388751 176389761 + DDB1 chr11 61299451 61342596 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC026362.1 chr12 122975320 122982907 + AC079949.1 chr12 127142029 127146532 - AP003392.4 chr11 119065263 119065677 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA