exRNAdisease

Entry Detail

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General Information

Database ID: exR0373804 RNA Name: AK1 RNA Type: mRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 127866486 End Site(bp): 127877675 External Links: ENSG00000106992

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD17C chr15 80679684 80755621 + BCL11B chr14 99169287 99272197 - C9orf16 chr9 128160265 128163924 + CBR3 chr21 36135079 36146562 + CBX5 chr12 54230942 54280133 - CLASP1 chr2 121337776 121649587 - DBNDD1 chr16 90004871 90020128 - ECI1 chr16 2239402 2252300 - EIF4A1 chr17 7572706 7579006 + HNRNPA1P48 chr16 51553436 51647132 + HNRNPA3 chr2 177212563 177223958 + IGFBP2 chr2 216632828 216664436 + KANK1 chr9 470291 746106 + LCMT1 chr16 25111731 25178231 + MANEAL chr1 37793802 37801137 + MBNL1 chr3 152243828 152465780 + NIP7 chr16 69337996 69343106 + PRCP chr11 82822936 82970584 - RPS12 chr6 132814569 132817564 + RPS19 chr19 41860255 41872925 + SAP30L chr5 154445997 154461053 + SENP3-EIF4A1 chr17 7563287 7578715 + SLC44A2 chr19 10602457 10644557 + SYNRG chr17 37514807 37609472 - TBCEL chr11 121024072 121090775 + YTHDF2 chr1 28736621 28769775 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AL157935.2 chr9 127934503 127940952 + SNHG5 chr6 85650491 85678932 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA