exRNAdisease

Entry Detail

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General Information

Database ID: exR0373809 RNA Name: AK6 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 69350984 End Site(bp): 69370013 External Links: ENSG00000085231

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AL513165.2 chr9 37512547 37592469 - BICC1 chr10 58512872 58831435 + FBXO10 chr9 37510892 37576380 - FOXP4 chr6 41546426 41602384 + GLRX3 chr10 130136391 130184521 + KPNA1 chr3 122421902 122514945 - LTV1 chr6 143843338 143863812 + NFS1 chr20 35668052 35699355 - PPP2R1B chr11 111726908 111766389 - RAB12 chr18 8609437 8639382 + RAB1A chr2 65070696 65130331 - RANBP9 chr6 13621498 13711835 - RBMX chrX 136848004 136880764 - SNRPD2 chr19 45687454 45692569 - TAF9 chr5 69364743 69370013 - TJP1 chr15 29699367 29968865 - USP1 chr1 62436297 62451804 + WDFY4 chr10 48684876 48982956 + WDR7 chr18 56651343 57036606 + ZFAND5 chr9 72351413 72365235 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + AL138689.2 chr13 106491147 106521630 + IQCH-AS1 chr15 67290636 67521844 - SNHG3 chr1 28505980 28510892 + WDR7-OT1 chr18 57027832 57038845 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA