exRNAdisease

Entry Detail

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General Information

Database ID: exR0373813 RNA Name: AKAP1 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 57085092 End Site(bp): 57121346 External Links: ENSG00000121057

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand LRCH3 chr3 197791226 197888436 + TP53I11 chr11 44885903 44951306 - UNKL chr16 1363205 1414751 - NUP210 chr3 13316235 13420322 - CUEDC2 chr10 102423245 102432584 - TAF6 chr7 100107070 100119841 - MT-ND4 chrMT 10760 12137 + YME1L1 chr10 27110112 27155266 - NOP56 chr20 2652593 2658393 + TAOK2 chr16 29973868 29992261 + LIN28A chr1 26410817 26429728 + TBC1D9B chr5 179862066 179907859 - PLCG2 chr16 81739097 81962685 + CYBRD1 chr2 171522247 171558129 + ABCE1 chr4 145098288 145129524 + NAP1L4 chr11 2944431 2992377 - CC2D1B chr1 52345723 52366193 - WASF2 chr1 27404230 27490167 - TMEM41A chr3 185476496 185499057 - NAPA chr19 47487637 47515091 - TPRG1L chr1 3625015 3630127 + TOP2A chr17 40388525 40417896 - RAN chr12 130872037 130877678 + SENP3-EIF4A1 chr17 7563287 7578715 + TSC22D1 chr13 44432143 44577147 - SLC2A11 chr22 23856703 23886309 + FKRP chr19 46746046 46776988 + UBL5 chr19 9827892 9830115 + LMAN2 chr5 177331567 177351668 - POLL chr10 101578882 101588270 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1197 chr14 101025620 101025640 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005618.1 chr5 141326210 141329357 + AC016876.2 chr17 7581964 7584086 - AC008738.1 chr19 33178056 33178651 + ERVK13-1 chr16 2660348 2682379 - LINC00458 chr13 54115783 54142319 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA