exRNAdisease

Entry Detail

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General Information

Database ID: exR0373816 RNA Name: AKAP12 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 151239967 End Site(bp): 151358559 External Links: ENSG00000131016

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand MAVS chr20 3846799 3876123 + CALM1 chr14 90396502 90408268 + AP1B1 chr22 29327680 29423179 - SLC25A3 chr12 98593591 98606379 + MEPCE chr7 100428790 100434118 + PLCXD1 chrX 276322 303356 + CEP68 chr2 65056366 65087004 + ARNT chr1 150809713 150876708 - SLC3A2 chr11 62856102 62888875 + PAQR3 chr4 78887127 78939438 - RAB3GAP1 chr2 135052265 135176394 + ACTG1 chr17 81509971 81523847 - TMBIM6 chr12 49707725 49764934 + ZNF646 chr16 31074422 31084196 + PSME4 chr2 53864069 53970993 - TAF10 chr11 6606294 6612539 - LAMP1 chr13 113297239 113323672 + HNRNPF chr10 43385617 43409166 - ADGRG6 chr6 142301854 142446266 + SNX3 chr6 108211222 108261246 - GPHN chr14 66507407 67181803 + PARN chr16 14435700 14632728 - UNC45A chr15 90930180 90954093 + HERC2 chr15 28111040 28322172 - B4GALT4 chr3 119211732 119240946 - DSTN chr20 17570075 17609919 + ADGRL1 chr19 14147743 14206187 - MTHFD2 chr2 74198610 74217565 + SC5D chr11 121292681 121313410 + STT3B chr3 31532638 31637616 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC091564.7 chr11 6610883 6616594 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA