exRNAdisease

Entry Detail

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General Information

Database ID: exR0373825 RNA Name: AKAP8 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 15353385 End Site(bp): 15379798 External Links: ENSG00000105127

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ANAPC7 chr12 110372900 110403730 - SHQ1 chr3 72749277 72861914 - ZNF500 chr16 4748239 4767624 - UBN1 chr16 4846665 4882401 + CALR chr19 12938578 12944489 + ICE2 chr15 60419609 60479160 - L1TD1 chr1 62194849 62212328 + TRIP12 chr2 229763838 229923239 - ZNF43 chr19 21804949 21852125 - GMPS chr3 155870650 155944020 + ABCC1 chr16 15949577 16143074 + RPL36A-HNRNPH2 chrX 101391011 101412297 + BAMBI chr10 28677510 28682932 + NACA2 chr17 61590421 61591219 - ZZEF1 chr17 4004445 4143030 - PPP1R12C chr19 55090914 55117637 - TLE3 chr15 70047790 70098176 - NCL chr2 231453531 231483641 - DCAF10 chr9 37800554 37867666 + MIXL1 chr1 226223618 226227054 + NAT10 chr11 34105617 34147670 + ALDOA chr16 30064164 30070457 + MON1B chr16 77190835 77202398 + TIMMDC1 chr3 119498547 119525090 + SH3PXD2A chr10 103594027 103855543 - ATF6B chr6 32115264 32128253 - CDK7 chr5 69234795 69277430 + RIPOR1 chr16 67518418 67546788 + NPC2 chr14 74476192 74494177 - CACNG6 chr19 53992288 54012669 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL355075.4 chr14 20343048 20343685 - LINC01248 chr2 5602505 5691488 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA