exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373827 RNA Name: AKAP9 RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 91940867 End Site(bp): 92110673 External Links: ENSG00000127914

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CCDC85C chr14 99500190 99604207 - SFRP1 chr8 41261962 41309473 - YWHAE chr17 1344275 1400222 - RBBP6 chr16 24537693 24572863 + SMARCC1 chr3 47585269 47782106 - PABPC1 chr8 100685816 100722809 - C2orf68 chr2 85605254 85612066 - FKBP4 chr12 2794970 2805423 + KDM5C chrX 53191321 53225422 - RHOA chr3 49359145 49412998 - U2AF1 chr21 43092956 43107587 - PIGQ chr16 566995 584136 + ALDOA chr16 30064164 30070457 + UBE2C chr20 45812576 45816957 + ZDHHC9 chrX 129803288 129843909 - TPT1 chr13 45333471 45341370 - CNPY3 chr6 42929192 42939294 + OXA1L chr14 22766522 22773042 + HMGA2 chr12 65824131 65966295 + UQCC2 chr6 33694293 33711727 - KMT2B chr19 35717973 35738878 + MRPL42 chr12 93467488 93516214 + RPS13 chr11 17074388 17077715 - SALL3 chr18 78980275 79002677 + AUP1 chr2 74526645 74529760 - ILF2 chr1 153661788 153671028 - CBX3 chr7 26201162 26213607 + TUBB chr6 30720352 30725426 + C12orf10 chr12 53299695 53307177 + MEX3D chr19 1554669 1568058 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand Z98883.1 chr16 568837 576257 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA