exRNAdisease

Entry Detail

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General Information

Database ID: exR0373830 RNA Name: AKIRIN2 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 87674860 End Site(bp): 87702233 External Links: ENSG00000135334

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RPS27 chr1 153990762 153992155 + PLCB3 chr11 64251523 64269150 + TM9SF4 chr20 32109714 32167258 + SLAIN2 chr4 48341529 48426201 + COX4I1 chr16 85798633 85807068 + FASN chr17 82078338 82098294 - ADGRL3 chr4 61201258 62078335 + PITX1 chr5 135027734 135034813 - RPLP0 chr12 120196699 120201235 - KLC2 chr11 66257294 66267860 + SOX4 chr6 21593751 21598619 + UBE2Z chr17 48908407 48929056 + SMARCAL1 chr2 216412414 216483053 + HCN1 chr5 45254948 45696498 - HLA-DRA chr6 32439878 32445046 + SECISBP2 chr9 89318500 89359663 + TAF7 chr5 141260225 141320784 - ELOVL5 chr6 53267398 53349179 - RPL18 chr19 48615328 48619184 - UBC chr12 124911604 124917368 - SCAND1 chr20 35953617 35959472 - TUBA1C chr12 49188736 49274603 + RACGAP1 chr12 49976923 50033136 - ACTR10 chr14 58200080 58235636 + HSP90AB1 chr6 44246166 44253888 + AFTPH chr2 64524305 64593005 + EDARADD chr1 236348257 236502915 + UBE2Q2L chr15 84172490 84182234 + MFSD11 chr17 76735865 76781449 + TP53 chr17 7661779 7687550 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3648 chr21 8987026 8987046 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC079949.1 chr12 127142029 127146532 - AL139819.1 chr10 100335563 100346390 - RASAL2-AS1 chr1 178090677 178093984 - SNHG25 chr17 64145970 64146476 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA