exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373833 RNA Name: AKR1A1 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 45550543 End Site(bp): 45570049 External Links: ENSG00000117448

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand COG8 chr16 69320140 69339667 - ATXN7L3 chr17 44191805 44200113 - HNRNPUL1 chr19 41262496 41307787 + SNRPB chr20 2461634 2470853 - ZMAT2 chr5 140698680 140706686 + MRPL10 chr17 47823272 47831541 - EPS15 chr1 51354263 51519266 - FBLN1 chr22 45502238 45601135 + EEF1G chr11 62559596 62574086 - SLC2A4RG chr20 63739776 63744050 + POU3F2 chr6 98834574 98839458 + UBAP2L chr1 154220179 154271510 + PDK1 chr2 172555373 172608669 + RNF126 chr19 647526 663233 - MTRNR2L6 chr7 142666272 142667718 + DR1 chr1 93345907 93369493 + ZNF292 chr6 87152833 87265943 + TKT chr3 53224712 53256052 - CLUH chr17 2689386 2712663 - FP565260.6 chr21 5155499 5165472 - WDR74 chr11 62832342 62841809 - SEC13 chr3 10293131 10321112 - CDKN1A chr6 36676460 36687339 + MRPL33 chr2 27771717 27988087 + RNF114 chr20 49936336 49953885 + C1orf43 chr1 154206696 154220637 - HDGF chr1 156742109 156766925 - NAA60 chr16 3443649 3486953 + CBS chr21 43053191 43076943 - RPL3 chr22 39312882 39320389 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + AC069287.1 chr11 112967 125927 - AL031005.1 chr1 21266082 21267251 + AL359924.1 chr1 237862175 237928321 + LINC01641 chr1 227393554 227431035 + MALAT1 chr11 65497688 65506516 + POLR2J4 chr7 43940895 44019175 - SLX1A-SULT1A3 chr16 30193892 30204310 + SNHG1 chr11 62851984 62855953 - SNHG3 chr1 28505980 28510892 + ZNF528-AS1 chr19 52388842 52397783 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA