exRNAdisease

Entry Detail

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General Information

Database ID: exR0373834 RNA Name: AKR1B1 RNA Type: mRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 134442356 End Site(bp): 134459284 External Links: ENSG00000085662

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand TUBB chr6 30720352 30725426 + PKM chr15 72199029 72231822 - INPP5F chr10 119726042 119829147 + P4HB chr17 81843161 81860624 - RPL3 chr22 39312882 39320389 - CKB chr14 103519667 103522833 - SLC12A4 chr16 67943474 67969601 - CCNB1IP1 chr14 20311368 20333312 - RPL26 chr17 8377516 8383213 - ARHGDIB chr12 14942031 14961728 - EDARADD chr1 236348257 236502915 + KLHDC3 chr6 43014103 43021298 + STK4 chr20 44966479 45080021 + TRIR chr19 12730640 12734684 - PTGIS chr20 49503874 49568137 - C12orf49 chr12 116710171 116738070 - TOMM7 chr7 22812628 22822852 - FSCN3 chr7 127591409 127602144 + CFL1 chr11 65823022 65862026 - ATP5ME chr4 672436 674330 - YWHAH chr22 31944522 31957603 + ZNF516 chr18 76357682 76495242 - GDF1 chr19 18868545 18896158 - FLRT3 chr20 14322985 14337614 - AKR1A1 chr1 45550543 45570049 + ACTB chr7 5527148 5563784 - RPL36 chr19 5674947 5691875 + PTPA chr9 129110950 129148946 + HOXB1 chr17 48528526 48531011 - ZNF277 chr7 112206695 112343934 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC135178.2 chr17 8318088 8318712 - NORAD chr20 36045618 36051018 - POLR2J4 chr7 43940895 44019175 - SNHG12 chr1 28578538 28583132 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA