exRNAdisease

Entry Detail

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General Information

Database ID: exR0373844 RNA Name: AKT1 RNA Type: mRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 104769349 End Site(bp): 104795751 External Links: ENSG00000142208

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand PPM1B chr2 44167969 44244384 + KEAP1 chr19 10486125 10503558 - AC010422.3 chr19 12643831 12648397 - FKBP1A chr20 1368978 1393172 - ACACA chr17 37084992 37406836 - TUFM chr16 28842411 28846348 - SCFD2 chr4 52872982 53366066 - P4HB chr17 81843161 81860624 - CRELD1 chr3 9933816 9945406 + SIGIRR chr11 405716 417455 - KDM4B chr19 4969113 5153598 + TMEM106C chr12 47963569 47968878 + FAT1 chr4 186587794 186726722 - POU5F1 chr6 31164337 31180731 - INTS5 chr11 62646848 62653302 - ZC3H14 chr14 88562970 88627596 + TPI1 chr12 6867119 6870948 + CA14 chr1 150257251 150265078 + KDELR3 chr22 38468078 38483447 + DLG3 chrX 70444835 70505490 + FBRSL1 chr12 132489551 132585188 + MOV10 chr1 112673141 112700746 + ENAH chr1 225486835 225653142 - EEF1A1 chr6 73515750 73523797 - RARRES2 chr7 150338317 150341662 - MVD chr16 88651935 88663161 - TUBB chr6 30720352 30725426 + HNRNPL chr19 38836388 38852347 - HPCAL1 chr2 10302889 10427617 + PPA1 chr10 70202835 70233911 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004816.1 chr14 70809841 70815994 + AC012313.3 chr19 58346854 58362751 - AC067930.1 chr8 143579636 143580670 + GSEC chr11 126340889 126355587 - MIR663AHG chr20 26167817 26251546 - PDCD4-AS1 chr10 110869868 110872233 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA