exRNAdisease

Entry Detail

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General Information

Database ID: exR0373845 RNA Name: AKT1S1 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 49869033 End Site(bp): 49878459 External Links: ENSG00000204673

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand YIPF3 chr6 43511832 43516985 - FOXRED2 chr22 36487190 36507101 - FAM86C1 chr11 71787510 71801237 + BABAM2 chr2 27889941 28338901 + PABPN1 chr14 23321289 23326185 + BBS10 chr12 76344474 76348415 - ESYT1 chr12 56118250 56144671 + ZNF585A chr19 37106734 37172741 - SEC62 chr3 169966635 169998373 + EEF1G chr11 62559596 62574086 - SEPHS1 chr10 13317428 13348298 - STAG3 chr7 100177563 100221488 + CBX1 chr17 48070052 48101478 - KIAA2013 chr1 11919591 11926428 - IRF2BP2 chr1 234604269 234609525 - NOMO3 chr16 16232528 16294811 + KAT7 chr17 49788681 49835026 + ZFP36L1 chr14 68787660 68796253 - PODXL chr7 131500262 131558217 - CRABP2 chr1 156699606 156705816 - PILRB chr7 100352176 100367733 + AGO2 chr8 140520156 140635633 - DPY19L1 chr7 34928876 35038271 - ATF5 chr19 49928702 49933935 + ID1 chr20 31605283 31606515 + MYL6 chr12 56158161 56163496 + TMEM256-PLSCR3 chr17 7389734 7404097 - SLC6A6 chr3 14402576 14489349 + NLRX1 chr11 119166568 119184016 + HNRNPUL1 chr19 41262496 41307787 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC113189.2 chr17 7420103 7444081 + AC113189.4 chr17 7439506 7445966 + AC079949.1 chr12 127142029 127146532 - AP001626.1 chr21 42648271 42651244 - HCG18 chr6 30286690 30327382 - SLX1A-SULT1A3 chr16 30193892 30204310 + STAG3L5P-PVRIG2P-PILRB chr7 100336104 100367831 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA