exRNAdisease

Entry Detail

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General Information

Database ID: exR0373848 RNA Name: AKTIP RNA Type: mRNA Chromosome: chr16 Starnd: - Coordinate: Start Site(bp): 53491040 End Site(bp): 53504411 External Links: ENSG00000166971

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AHCYL1 chr1 109984765 110023742 + AP002990.1 chr11 62559603 62591531 - ATXN2L chr16 28823035 28837237 + EEF1G chr11 62559596 62574086 - EI24 chr11 125569280 125584684 + EIF3H chr8 116642130 116766925 - ERG28 chr14 75649791 75660876 - FGF2 chr4 122826708 122898236 + FLRT3 chr20 14322985 14337614 - FRAS1 chr4 78057323 78544269 + HILPDA chr7 128455849 128458418 + HMGN3 chr6 79201245 79234738 - MT-CO3 chrMT 9207 9990 + NAPG chr18 10525905 10552764 + PIGX chr3 196639775 196736007 + PPP4R3B chr2 55547292 55618880 - PTGES3 chr12 56663341 56688408 - SH3KBP1 chrX 19533977 19887600 - SLC7A5 chr16 87830023 87869507 - TMCO3 chr13 113491021 113554590 + TMX1 chr14 51240162 51257655 + TRIM71 chr3 32817997 32897824 + TSPAN6 chrX 100627108 100639991 - TUFM chr16 28842411 28846348 - UQCR10 chr22 29767369 29770413 + VCPIP1 chr8 66628487 66667231 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA